1.Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome. Andrey Rzhetsky and Shawn M. Gomez. Bioinformatics. 2001 Oct; 17(10):988-996.

2.Yu, H, Hripcsak, G., and Friedman, C. Mapping abbreviations to full forms in biomedical articles. JAMIA 2001, (accepted)

3. Probablistic prediction of unknown metabolic and signal-transduction networks. Shawn M. Gomez, Shaw-Hwa Lo, and Andrey Rzhetsky. Genetics, 2001 (to be published).

4. Friedman C, Kra P, Yu H, Krauthammer M, Rzhetsky A. GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.Bioinformatics. 2001 Jun;17 Suppl 1:S74-82.

5. Hatzivassiloglou V, Duboue PA, Rzhetsky A. Disambiguating proteins, genes, and RNA in text: a machine learning approach.Bioinformatics. 2001 Jun;17 Suppl 1:S97-S106.

6. Koike, T., and A. Rzhetsky. 2000. A graphic editor for analyzing signal-transduction pathways.Gene 259: 235-244. (pdf)

7. Krauthammer M, Rzhetsky A, Morozov P, Friedman C.Using BLAST for identifying gene and protein names in journal articles. Gene. 2000 Dec 23;259(1-2):245-52. (pdf)

8. Rzhetsky A, Koike T, Kalachikov S, Gomez SM, Krauthammer M, Kaplan SH, Kra P, Russo JJ, Friedman C. A knowledge model for analysis and simulation of regulatory networks.Bioinformatics. 2000 Dec;16(12):1120-8. (pdf)